FastQCFastQC Report
Sun 21 May 2023
EGAF00007946438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506873
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47400.9351454900931792No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18750.36991514639761836No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6530.12882911498541055No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6440.12705352228270198No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA6090.12014843954994645No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5930.11699183030068677No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5550.10949488333369503No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5290.10436539330364807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)