FastQCFastQC Report
Wed 31 May 2023
EGAF00007946439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482396
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22000.4560568495592833No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19690.4081708803555585No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13580.2815114553188666No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11230.23279629184321596No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10910.2261627376678082No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9960.20646937370956642No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9480.19651904244645477No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8130.1685337357689533No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8020.1662534515211569No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7780.16127828588960108No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7440.15423013457823034No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7080.1467673861308966No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6820.1413776233633778No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6520.13515866632393303No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6450.13370757634806257No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6280.13018350069237722No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6180.1281105150125623No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6150.12748861930861782No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6020.12479373792485841No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5870.12168425940513602No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT5580.11567260093367274No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5020.10406388112670917No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5020.10406388112670917No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA5010.10385658255872769No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4880.10116170117496828No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)