FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482396
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45050.9338800487566232No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26340.546024428063251No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22050.4570933423991907No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14110.2924982794218857No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13220.27404870687153293No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11670.24191742883440162No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9700.20107961094204763No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9460.19610444531049182No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9310.1929949667907694No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8400.17413079710445362No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8260.1712286171527127No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7990.16563155581721242No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7080.1467673861308966No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6810.14117032479539632No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6780.14054842909145185No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6740.13971923481952586No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6690.1386827419796184No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6680.13847544341163692No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6610.13702435343576647No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6460.1339148749160441No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6360.13184188923622914No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6220.12893970928448828No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6130.12707402217265484No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6120.12686672360467333No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5770.1196112737253211No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA5590.11587989950165424No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5200.10779525535037605No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5150.10675876251046858No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4960.10282008971882022No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)