FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528371
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18250.3454012426874299No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15750.2980860039631244No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14050.26591164163059666No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12000.22711314587666623No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11850.22427423155320786No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9400.17790529760338852No Hit
AACGTTCAGCGCTACGAACTGTGCTTTCGCCATAGCGTCAGAAA8330.1576543754293858No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7930.15008393723349692No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7250.13721419230048584No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6860.12983301505949418No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6270.1186666187205581No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6230.11790957490096919No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6180.1169632701264831No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5800.10977135384038868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)