FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528371
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38960.7373606802795762No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14990.2837021713909355No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11900.225220536327694No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11840.22408497059831067No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10250.1939924787696524No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9610.1818797776562302No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9380.1775267756935941No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT8500.16087181166263856No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7950.15046245914329137No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7260.13740345325538306No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6920.13096858078887752No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6760.12794040551052197No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6460.1222625768636053No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6050.11450287771281921No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5610.10617539569734145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)