FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515611
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7380.14313115895510375No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6900.1338218152832271No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5930.11500918327964299No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5280.10240278039064335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)