FastQCFastQC Report
Sun 21 May 2023
EGAF00007946447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507837
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG27710.5456475207596138No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21150.4164722145097738No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20130.3963870296965365No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19130.3766956720364999No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG17570.3459771540868428No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16580.3264827100034066No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14890.2932043155579448No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT11510.22664752666702112No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11420.2248753044776178No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11250.2215277736754116No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9500.18706789777034757No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9080.1787975275531322No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG8390.16521049076770694No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8160.16068147850589856No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA7780.15319876259508464No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7000.1378395036202561No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6680.1315382691690444No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5930.11676975092401697No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5830.1148006151580133No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5490.10810555355360085No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5340.10515184990459536No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5280.10397036844499317No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5080.10003209691298587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)