FastQCFastQC Report
Wed 31 May 2023
EGAF00007946448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507837
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA46430.9142697361554988No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG27400.5395431998850024No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22620.44541851027002755No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19610.38614752371331745No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19260.37925554853230464No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18010.35464135145725895No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG17340.3414481418250344No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11700.23038888462242807No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA11500.22645061309042075No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9430.18568950273414503No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9320.183523453391541No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8940.17604073748072707No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8420.16580123149750806No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7920.15595555266748978No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7890.15536481193768867No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7430.14630678741407183No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6910.1360672814308528No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5770.11361913369841112No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5740.11302839296861No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5570.10968086216640378No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5320.10475802275139465No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5280.10397036844499317No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5100.10042592406618658No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5100.10042592406618658No Hit

[OK]Adapter Content

Adapter graph