FastQCFastQC Report
Wed 31 May 2023
EGAF00007946449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506534
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10960.21637244489017518No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10920.21558276443437163No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9850.19445881224162642No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9020.1780729427837026No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7910.1561593101351538No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7840.15477736933749758No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7240.1429321625004442No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6900.13621987862611393No Hit
TTTCGGCACCAGCAGGGAAGCGCGGGTCTTGTTACCGGTGATGG6270.12378241144720789No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5770.11391140574966341No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5590.11035784369854738No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5510.10877848278694026No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5110.10088167822890468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)