FastQCFastQC Report
Wed 31 May 2023
EGAF00007946450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506534
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45860.9053686425787805No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24460.4828895987238764No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13360.26375327223838874No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11840.2337454149178535No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10740.21202920238325562No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9520.18794394848124707No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8260.16306901412343494No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7790.15379026876774313No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7500.14806508546316735No Hit
ATTGAAAACGTAGCATTCTTCGGCAAACTGC6110.12062368962399365No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6010.11864948848448476No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5440.10739654198928404No Hit
GAAGACGGTAAGGTTATGGTCCTGTGCAACC5210.10285587936841357No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5180.10226361902656089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)