FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508635
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11510.22629193822682278No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10860.21351263676310123No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10810.2125296135735842No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8690.17084943033806166No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8130.1598395706154708No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7240.1423417578420675No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7010.1378198511702891No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6630.13034887492995959No Hit
TTTCGGCACCAGCAGGGAAGCGCGGGTCTTGTTACCGGTGATGG5880.11560352708720398No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5800.11403068998397671No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5730.11265445751865286No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5300.10420045808880632No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5280.10380724881299949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)