FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508635
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45450.8935680792709901No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25190.49524708287868513No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14520.2854699342357486No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11330.22275305474456142No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10510.20663147443648194No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9330.1834321271638798No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7880.15492445466788562No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7490.1472568737896527No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7150.14057231610093682No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6090.11973222448317555No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6000.11796278274204489No Hit
ATTGAAAACGTAGCATTCTTCGGCAAACTGC5760.11324427143236308No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5500.10813255084687447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)