FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494436
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11740.23744225744080122No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9150.1850593403392957No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7420.15006997872323213No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6950.1405641983997929No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6370.12883366097937854No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6340.12822690904383985No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6340.12822690904383985No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5900.1193278806559393No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5810.11750762484932327No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5210.10537258613854977No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5090.1029455783963951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)