FastQCFastQC Report
Wed 31 May 2023
EGAF00007946458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450660
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42840.950605778191985No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8890.19726623174899038No Hit
CCGAACGGTGGTACCCTGACTAACCTGCTGG7360.1633160253849909No Hit
GGCGTTCAGAAACGCGCAAGCGTTACCGGTT6580.1460080770425598No Hit
CTGGGCTGGAAAGCTGGTATCCTGACCGGTT5000.11094838681045577No Hit
CTGGACCAGGTAGCTGAACAGGCGGCTACCA4780.10606665779079572No Hit
TCCGAAAAATCTGAAAAATCTGACCGTAAAA4620.10251630941286113No Hit
GACGAGGCCACCAACGCAGAAATGGACCGTG4620.10251630941286113No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4540.10074113522389384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)