FastQCFastQC Report
Sun 21 May 2023
EGAF00007946460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478456
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43490.9089655057100339No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13710.28654672529971403No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7750.16197936696373336No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6260.13083752737973817No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5790.12101426254451819No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5240.10951895263096292No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG4920.10283077231762168No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)