FastQCFastQC Report
Sun 21 May 2023
EGAF00007946462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478304
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44230.9247256974643742No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38170.7980280323810799No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG21780.455358934903325No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG20430.42713420753328424No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG14610.30545427176021944No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14280.2985548939586539No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC9250.1933916504984278No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG9190.1921372181708704No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8820.1844015521509333No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6570.13736033986753193No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6450.1348514752124172No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6230.13025189001137352No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5880.12293436810062221No Hit
CCGGCAGTTGCGCCGACCAGCGCGGCTAGCC5480.1145714859169064No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5390.11268983742557036No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4830.10098180236836823No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)