FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517837
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47100.9095526198398337No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30450.5880228720620582No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA21300.4113263440040013No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15120.291983770954953No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13510.2608929064551201No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13230.2554857995855839No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13220.25529268862595755No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11930.23038137483416596No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8790.16974453351151036No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8570.16549609239973195No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8450.16317876088421646No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8260.15950965265131692No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7760.14985410467000235No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7530.14541255259859762No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7330.1415503334060718No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6180.11934257304904825No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6150.11876324017016937No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6010.11605968673540129No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5750.1110388017851177No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5350.10331436340006604No Hit

[OK]Adapter Content

Adapter graph