FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492818
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44640.9058110702125328No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34510.7002585132848232No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28570.5797272015226717No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG21390.43403447114350524No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18650.3784358525865532No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16840.3417082979923623No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16600.3368383460019723No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16250.3297363326826537No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15370.31187984205122377No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14470.2936175220872614No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11550.2343664395375169No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10810.21935075423381453No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9920.2012913489361184No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9640.19560973828066344No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9310.18891355429387727No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9200.18668149296494851No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9040.18343485830468856No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8450.1714628929949799No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC8370.1698395756648499No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8130.16496962367445994No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7630.15482389036114752No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7410.15035976770329007No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7260.14731604770929632No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6610.13412659440199018No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6560.13311202107065895No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6530.13250327707186021No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6500.13189453307306145No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6270.12722749574893774No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6260.1270245810826715No Hit
GGTATGGATGAACCACCGTCTGGTTGGGAAC6190.12560417841880775No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC6130.12438669042121027No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6070.12316920242361278No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5890.11951673843082031No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5770.11708176243562533No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC5740.11647301843682657No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5700.11566135977176158No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5680.11525553043922909No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC5590.11342929844283284No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5580.1132263837765666No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5010.10166024779939044No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)