FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477831
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17950.37565582810659No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10780.22560277587682673No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC10550.22078935858075344No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG10180.21304603510446163No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9150.19149029677856816No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8260.1728644646328932No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7740.16198195596351012No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6950.1454489139465627No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6780.1418911707277259No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5850.12242822253055996No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5320.11133643484830409No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC4780.10003536815317549No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)