FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474056
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC30560.6446495772651333No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT29710.6267192061697352No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21460.4526891337732251No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA20680.4362353814739187No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18310.38624128794910306No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16920.35691985756956984No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT16570.34953676358911184No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC15830.33392679345900067No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15170.32000438766727984No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14560.307136709587053No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14320.3020740165718818No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14140.2982769968105034No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12680.26747894763487856No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11890.2508142497932734No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11210.23646995291695494No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC10460.22064903724454496No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10290.21706296302546535No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10270.21664107194086774No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10200.21516445314477614No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9930.20946892350270854No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9650.20356244831834214No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9650.20356244831834214No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9440.19913259193006733No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9440.19913259193006733No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC9270.19554651771098774No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC9150.19301517120340214No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8120.1712877803466257No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8040.16960021600823533No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7800.1645375229930641No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7350.1550449735896181No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7190.1516698449128373No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT7090.14956038948984932No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6870.1449195875592757No Hit
TACCGCACCTGCAGACTCGGCCTGAACGGTGCCTTCACCATCGT6640.1400678400864033No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG6630.1398568945441045No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6470.1364817658673237No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6140.12952056297146328No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5790.12213746899100528No Hit
AACCGCACCTGCGGACTCAGCCTGAACAGTACCTTCACCATCGT5630.11876234031422447No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT5520.11644193934893768No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5500.11602004826434008No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5490.11580910272204127No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5450.11496532055284608No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5350.11285586512985808No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5290.11159019187606527No Hit
CAGTGCCATGGCAATTTCGAACAGGAAGCGCGGGCGTTTGGTTA5240.11053546416457127No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5140.10842600874158327No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4860.10251953355721685No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA4820.10167575138802167No Hit
TTCACCGCTGGTACGAATGATGTTACGTACTTTAATCATTTTAT4810.10146480584572286No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4800.10125386030342406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)