FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474056
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43980.927738495030123No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC40750.8596030848676106No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG30230.6376883743692728No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24180.5100663212784987No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21760.4590175000421891No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21050.44404036653897433No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20460.43159457954334507No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG19830.4183050103785207No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18270.38539750577990783No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC18110.3820223771031271No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16660.351435273469801No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16580.3497477091314106No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15770.3326611202052078No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15320.3231685708017618No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14700.3100899471792362No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14450.3048163086217662No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG11790.24870479437028536No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11420.24089980930522975No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11210.23646995291695494No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG11110.23436049749396692No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC10730.22634456688661256No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10480.22107092832914255No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10180.21474256206017853No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC9930.20946892350270854No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9840.20757041362201933No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9460.19955448301466494No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9360.19744502759167695No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9330.19681219096478053No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9080.19153855240731055No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8820.18605396830754173No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8350.17613952781949813No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7820.1649594140776617No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA7010.1478728251514589No Hit
GCAGCGCAGCAGCTGGTGCTGAGCGCAGATA7000.14766187960916008No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC6920.1459743152707697No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG6890.1453414786438733No Hit
GCCGCGCAGCAGCTGGTACTGAGCGCGGATA6670.1407006767132997No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6210.13099718176755487No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6150.12973150851376208No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6140.12952056297146328No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6020.1269892164638777No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5930.12509070658318847No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5560.11728572151813288No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5460.11517626609514486No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5450.11496532055284608No Hit
ATGCAGACCCTGTCCGAACGTCTGAAGAAAC5410.11412153838365087No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5270.11116830079146768No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5200.10969168199537607No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5150.10863695428388208No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5150.10863695428388208No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5120.10800411765698567No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5020.10589466223399767No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4970.10483993452250367No Hit
ACCCCGTGCGAACTGACCGCGGCCAAAAACG4880.10294142464181448No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)