FastQCFastQC Report
Wed 31 May 2023
EGAF00007946471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474448
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16760.3532526219944019No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14750.31088759990557446No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11180.2356422621657168No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT9690.20423734529389945No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9300.19601726638114186No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8910.1877971874683843No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8680.1829494486223991No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8350.17599399723468115No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7950.16756314706775033No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7570.159553839409166No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7220.15217684551310154No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7210.15196607425892827No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7100.14964759046302228No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6260.13194280511246753No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6240.131521262604121No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5980.12604120999561594No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5790.12203655616632382No Hit
GGTAGTGTTGTCGCCGGTGATACCGGACGTAGAGCTGCTGCCGA5770.12161501365797728No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5230.11023336593262065No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5230.11023336593262065No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5040.1062287121033285No Hit
GTCGCCCGGCAGCGGTGCAGTCGGAGCCCACGGGGAGTTACCGT4750.10011634573230364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)