FastQCFastQC Report
Sun 21 May 2023
EGAF00007946472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474448
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44690.9419367349003473No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33720.7107206690722692No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20120.4240717633966209No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15710.33112164030620844No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14180.29887363841769804No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9870.20803122786901834No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9430.19875729268539438No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9220.1943310963477557No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9060.19095875628098338No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8580.18084173608066637No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8440.17789093852224058No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7810.16461234950932452No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7090.14943681920884902No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7040.14838296293798264No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6530.13763362897514586No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6380.13447206016254679No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6150.12962432131656157No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC6130.129202778808215No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5630.11866421609955148No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5330.11234107847435336No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5180.1091795096617543No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5100.10749333962836811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)