FastQCFastQC Report
Wed 31 May 2023
EGAF00007946473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486861
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23010.4726194950920283No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22090.4537229311856978No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16970.3485594450982929No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15300.3142580736596277No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13330.2737947792080286No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11730.24093118980571454No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11440.23497466422654514No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10200.2095053824397518No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9660.19841392101647085No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8620.1770525879049667No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7300.14994012664805767No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT7230.14850234461170642No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7200.14788615231041302No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6860.14090263956242133No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6750.13864326779101224No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5870.12056829361973953No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5840.11995210131844612No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5540.11379017830551225No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5320.10927143476269408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)