FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486861
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30780.6322133011270157No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23090.47426267456214405No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18210.3740287268850863No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17320.3557483552800491No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14920.3064529711765781No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12570.2581845742419294No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12240.25140645892770214No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11980.24606612564982613No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9450.1941005749074171No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9310.19122501083471463No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9120.18732245959318983No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8860.1819821263153138No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8740.17951735711014027No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8340.17130145975956176No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7740.158977613733694No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7430.15261029328699569No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7390.1517887035519378No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7190.14768075487664858No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6490.13330293451313618No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6440.1322759473443139No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6050.12426544742749983No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5910.12138988335479736No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5800.11913051158338828No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5600.11502256290809904No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5530.1135847808717478No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5120.10516348608740483No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4930.10126093484588003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)