FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470302
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44070.9370574652032098No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33870.7201755467763267No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17580.3738023652886868No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13060.27769390731912685No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11970.2545173101539011No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11890.25281627549957264No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10040.21347984911822618No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9660.2053999345101658No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9530.202635753196882No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9250.19668213190673225No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8960.19051588128479147No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8200.17435605206867077No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7690.1635119561473266No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7020.14926579091732545No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7000.14884053225374333No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6830.1452258336132953No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6660.14161113497284725No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5970.12693971107926397No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG5600.11907242580299468No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5590.11885979647120362No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5010.10652729522732203No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4880.10376311391403822No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4820.10248733792329184No Hit

[OK]Adapter Content

Adapter graph