FastQCFastQC Report
Sun 21 May 2023
EGAF00007946481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543045
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG21010.38689243064571077No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG16290.2999751401817529No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14510.2671970094559383No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14190.26130431179736485No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12190.22447495143128102No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11750.21637249215074256No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11460.2110322348976604No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11240.2069810052573912No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10780.19851025237319192No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10630.1957480503457356No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG10230.18838217827251885No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9620.17714922336086328No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9020.16610041525103814No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT8970.16517968124188603No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8960.1649955344400556No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8710.16039186439429512No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8460.15578819434853466No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG8420.15505160714121297No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA8290.15265769871741752No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8260.15210525831192626No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8160.15026379029362208No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7260.13369057812888435No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6770.1246673848391938No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT6540.12043200839709416No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6480.11932712758611164No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5890.10846246627811691No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5520.1016490346103914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)