FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463723
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA18760.4045518553101744No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17340.3739301263901079No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16570.3573253860602127No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12320.2656758452783235No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11850.25554048429773807No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9950.21456774841877588No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9890.21327387254891392No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9880.21305822657060355No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9740.210039182874259No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9580.20658884722129373No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9350.20162898972015622No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8320.17941745395419248No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8270.17833922406264086No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8070.1740263044964343No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6850.14771749514257435No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6610.14254199166312648No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6530.14081682383664385No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5900.1272311272030932No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5000.10782298915516374No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4970.10717605122023276No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4840.10437265350219851No Hit

[OK]Adapter Content

Adapter graph