FastQCFastQC Report
Wed 31 May 2023
EGAF00007946486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485657
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA15170.31236036956123353No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8720.17955058817231093No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6500.13383931457798404No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6420.1321920614754858No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5480.11283683752113118No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5150.10604191847332581No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)