FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442305
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACACGCGGTACCGGGCGCGGGGTACGCGGTTTCTTAGTCGGAC17240.38977628559478184No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12810.28961915420354734No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11580.2618102892800217No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11430.25841896428934785No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7690.17386192785521304No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7070.15984445122709443No Hit
GAAAGTATCATCCGCCGCTTCGTTAGCGGTGCCGCCTTGAGACT7000.1582618328981133No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6640.15012265292049604No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6310.14266173794101356No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG6150.1390443246176281No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6090.13768779462135858No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6060.1370095296232238No Hit
GCGGAAGGCATCGGAGTCATAGCGACGCTTGTCCTGTGCGATGT5020.11349634302121839No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4560.10309627971648522No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)