FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442305
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44020.9952408405964209No Hit
GGTTACGTCGAACCGACTGCAGTTGCTACTC16320.36897615898531555No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12750.2882626242072778No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11340.25638416929494356No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10850.24530584099207559No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7410.1675314545392885No Hit
GACATGCCATCCTCTGACTTCGACCCGTACG7410.1675314545392885No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7150.16165315788878715No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6930.15667921456913217No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6640.15012265292049604No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6370.1440182679372831No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6360.1437921796045715No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6010.13587908795966586No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG5940.1342964696306847No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5830.13180949797085723No Hit
GAAAAACAGCGTAAACAAAAAGATCTGATTA5240.11847028634087338No Hit
ACTACTACCACTCGTCGTCCGACCAAAAAAC4970.11236590135766045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)