FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441586
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24270.549609815528572No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20780.4705765128423456No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19890.45042188837508434No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11520.2608778358009538No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10560.23913801615087438No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9780.22147441268518478No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9080.20562246085700178No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8330.18863822675537723No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8300.18795885739131224No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC7630.17278627492719426No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7170.16236927801153117No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6110.1383648938145684No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5690.1288537227176586No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5630.12749498398952866No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5620.12726852753484033No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA5540.1254568758973337No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5320.12047483389419048No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4880.11051074988790406No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4610.10439642561131919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)