FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532516
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19970.3750122062060107No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18350.34459058507162227No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18090.3397081026673377No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17870.33557677140217385No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG17510.32881641115008753No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17490.32844083558052717No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13920.2614005964140045No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11540.21670710363632267No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10760.20205965642346896No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10470.19661381066484387No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10460.19642602288006372No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC10460.19642602288006372No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10220.19191911604533948No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9510.17858618332594703No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8900.1671311284543563No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8820.16562882617611488No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8310.15605164915232594No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8160.15323483238062333No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7630.143282079787274No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7240.13595835618084715No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7050.1323903882700238No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6940.13032472263744188No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6920.12994914706788152No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6710.12600560358749785No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6610.12412772573969608No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG6570.12337657460057538No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6040.11342382200722606No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5830.10948027852684239No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5580.10478558390733798No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5340.10027867707261377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)