FastQCFastQC Report
Wed 31 May 2023
EGAF00007946492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532516
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA39020.7327479362122452No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27490.5162286203607027No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24920.46796715967219765No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23560.4424280209420937No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20760.3898474412036446No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18130.34045925380645836No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG17270.3243095043153633No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14800.2779259214746599No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12340.23173012641873672No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12190.2289133096470341No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG11190.2101345311690165No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10930.20525204876473196No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10490.19698938623440423No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10420.195674871740943No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9640.1810274245280893No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9400.17652051769336508No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9030.16957236965649858No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8630.16206085826529157No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8080.1517325301023819No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7800.14647447212853698No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7460.14008968744601102No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA7310.13727287067430838No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7030.13201481270046347No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG6740.12656896694183836No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6560.1231887868157952No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6450.12112312118321326No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6120.11492612428546747No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6000.11267267086810537No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5990.11248488308332519No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5710.10722682510948028No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5470.10271991827475607No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5380.10102982821173448No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5380.10102982821173448No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)