FastQCFastQC Report
Wed 31 May 2023
EGAF00007946494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460050
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38730.8418650146723182No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18020.39169655472231274No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12970.2819258776219976No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11260.2447560047820889No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10920.23736550374959245No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10130.22019345723290948No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10070.21888925116835128No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9300.20215194000652104No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8920.1938919682643191No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8690.18889251168351268No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8570.18628409955439626No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8220.17867623084447343No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8110.1762851863927834No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8040.17476361265079882No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7550.16411259645690685No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7270.1580263014889686No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7240.15737419845668948No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6910.1502010651016194No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6550.1423758287142702No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6370.1384632105205956No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6270.13628953374633193No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6200.13476796000434735No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6150.13368112161721554No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6150.13368112161721554No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5880.12781219432670363No Hit
GGTCAAGACGTTGACGGCGTGGTCAGCCTGC5520.1199869579393544No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5400.11737854581023802No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5380.11694381045538528No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5140.11172698619715249No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5020.10911857406803607No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4820.10477122051950874No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)