FastQCFastQC Report
Sun 21 May 2023
EGAF00007946498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469357
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14090.3001979303600458No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13790.2938062072154032No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11280.2403287902385604No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9780.20837017451534762No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6970.14850103439386222No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6390.13614370298088663No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4920.10482425957213805No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4740.10098922568535251No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)