FastQCFastQC Report
Wed 8 May 2024
EGAF00007946500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476717
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25970.5447676504089428No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13840.2903189942880157No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13210.27710360654224625No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10670.2238225194402549No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9460.19844058424599917No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9190.1927768466406694No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8450.17725401024087664No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8220.1724293448733735No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7230.1516623069871643No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7000.14683764161966115No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6700.14054459983596138No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6210.13026596492258508No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6000.12586083567399528No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5990.1256510676145386No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5880.12334361896051535No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4940.10362542137158942No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4890.10257658107430613No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4880.10236681301484948No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4850.10173750883647951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)