FastQCFastQC Report
Sun 21 May 2023
EGAF00007946502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446534
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39870.892877138135058No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11190.2505968190552119No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7070.15833060864346274No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6630.14847693568686818No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6530.14623746456036943No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6120.1370556329417245No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4680.10480724872014226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)