FastQCFastQC Report
Sun 21 May 2023
EGAF00007946506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440402
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38230.868070535556151No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13190.299499094009564No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10830.24591168977434255No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9880.22434048891694408No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8930.2027692880595456No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7700.17484025958101915No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7490.1700718888651732No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7390.16780123614334178No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6430.14600297001376017No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6350.144186447836295No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6330.14373231729192873No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6210.14100753402573105No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5260.11943633316833258No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4750.10785600428699234No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4740.1076289390148092No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4620.10490415574861149No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4610.10467709047642836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)