FastQCFastQC Report
Wed 31 May 2023
EGAF00007946508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472535
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41750.8835324367507169No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12330.2609330525781159No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8580.1815738516723629No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7710.1631625170622282No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7300.15448591109653254No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7020.14856042409556963No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6680.1413651898801147No Hit
ATGCGTATCAAACGTACCTCCAACCGTTCCA6650.1407303162728687No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6510.13776757277238724No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6240.132053710307173No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6080.1286677177351942No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5860.12401197794872337No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5580.11808649094776048No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5260.1113145058038029No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4850.10263789983810724No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)