FastQCFastQC Report
Sun 21 May 2023
EGAF00007946509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447826
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC9790.2186116929343093No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT9470.21146606047884672No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9180.2049903310660837No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7860.17551459718730042No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG7800.17417479110190118No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG6730.15028158257894805No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT6650.14849517446508242No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6570.14670876635121677No Hit
CGCGGACAGAGTCACGCCAGACGCCGGAGCCCAGTTGCCCAGTG6410.14313595012348546No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6350.1417961440380862No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6080.13576701665378965No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6070.13554371563955644No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5740.1281747821698606No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT5580.12460196594212931No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG5490.12259225681403045No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG5430.12125245072863121No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5330.11901944058629914No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4980.11120390508813692No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4520.10093205843340941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)