FastQCFastQC Report
Wed 31 May 2023
EGAF00007946510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447826
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39130.8737768686945375No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14660.32735928686588095No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10550.235582570016033No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9850.21995149901970854No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9470.21146606047884672No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG9440.2107961574361471No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8740.1951650864398226No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7690.1717184799453359No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7260.16211653633330803No Hit
ACCGTTACCCCGCCAACTCAGACCGGTTGCG6380.14246604708078583No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6370.14224274606655263No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6140.13710682273918887No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5940.13264080245452475No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5900.13174759839759193No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5860.1308543943406591No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5770.12884468521256023No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5630.12571847101329534No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC5180.11566992537280103No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4560.10182526249034222No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4540.10137866046187581No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4510.10070875741917619No Hit

[OK]Adapter Content

Adapter graph