FastQCFastQC Report
Wed 31 May 2023
EGAF00007946514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489782
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38230.78055134733412No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25230.5151271381961771No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19790.4040573152953763No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15820.32300084527401984No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15530.3170798436855581No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14150.28890404302322253No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11370.23214409676141629No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10600.21642281668170738No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8780.17926342740239534No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7760.1584378356084952No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6950.14189986565451568No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6640.1355705191289186No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6530.13332462197467443No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6440.13148706975756563No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6130.1251577232319685No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5960.12168679126631848No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5800.11842003176923611No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5620.11474492733501843No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5560.11351989252361254No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5450.11127399536936841No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5040.10290292415809482No Hit
ATGAGCACCAACCCGAAACCGCAGCGTAAAA4940.10086119947241834No Hit

[OK]Adapter Content

Adapter graph