FastQCFastQC Report
Sun 21 May 2023
EGAF00007946515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525220
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCACGGTGCGGGGTCGCCTCACAGGACGGGGTACGGCGGC9340.17783024256502036No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8410.16012337687064468No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8280.1576482236015384No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6610.1258520239137885No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5630.10719317619283349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)