FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525220
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10040.19115799093713112No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAATG9960.18963481969460416No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8720.16602566543543656No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7660.1458436464719546No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7300.13898937588058338No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6290.11975933894368075No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5750.10947793305662389No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)