FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480881
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC20420.42463728032507003No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC19360.4025944048527599No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT18560.3859582724208276No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT12910.26846558712030627No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12730.2647224573231215No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11680.24288753350621048No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT10950.2277070626620723No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA9390.19526660441980448No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG9260.1925632328996155No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAG8990.18694853820383836No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG7700.16012277465734767No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA7400.15388422499537308No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCAC6410.13329701111085696No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGC6140.12768231641507982No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG5750.11957220185451287No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT5380.1118779906047442No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)