FastQCFastQC Report
Sun 21 May 2023
EGAF00007946518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480881
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT42920.8925285049731638No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG29110.6053472688669338No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22140.4604049650537243No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC19850.41278403596731833No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC18610.38699803069782335No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT16700.3472792645165852No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT11140.23165814411465624No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA9340.19422684614280872No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC8230.17114421239350278No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC7720.16053867796814597No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTAAC6410.13329701111085696No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT6360.13225725283386117No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTATC6120.12726641310428152No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC5290.11000642570615184No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)