FastQCFastQC Report
Sun 21 May 2023
EGAF00007946519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472000
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC18400.3898305084745763No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15360.3254237288135593No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13900.2944915254237288No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG12430.26334745762711864No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11150.23622881355932204No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9600.2033898305084746No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT9410.199364406779661No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9000.19067796610169493No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7490.1586864406779661No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGC7260.1538135593220339No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6930.1468220338983051No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6780.14364406779661015No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5850.1239406779661017No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5690.12055084745762712No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5030.10656779661016949No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC4770.10105932203389831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)