FastQCFastQC Report
Wed 31 May 2023
EGAF00007946521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462691
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15890.343425742017891No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15810.34169672632491227No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA15440.3337000287448859No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15150.3274323468578382No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT14410.31143895169778535No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC12960.2801005422625467No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT11910.25740721129220145No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT11010.2379557847461913No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT10720.2316881028591436No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10550.22801394451156387No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA10070.2176398503536918No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT10000.21612696162233544No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9020.19494651938334656No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT8120.17549509283733636No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG7870.17009191879677799No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7710.1666338874108206No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7530.16274360210161856No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG7420.1603662055237729No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6770.1463179530183211No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6770.1463179530183211No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT6480.14005027113127336No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC6360.13745674759180534No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6330.13680836670693833No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG6280.13572773189882664No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6200.13399871620584797No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA5950.1285955421652896No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTT5910.12773103431880023No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5750.12427300293284287No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGAC5670.12254398723986419No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5650.12211173331661952No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5590.12081497154688552No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5530.1195182097771515No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5510.11908595585390681No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG5360.1158440514295718No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT4930.10655059207981135No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4890.10568608423332203No Hit
GTGCAGGGACAGATCCAGCGGTGCATCTGGGTCCTCGTAAC4730.10222805284736465No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG4650.10049903715438598No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)