FastQCFastQC Report
Wed 31 May 2023
EGAF00007946522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462691
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT30390.6568098363702773No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT20780.449111826251213No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16010.346019265557359No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG15970.3451547577108697No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG14670.31705825269996607No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC13270.2868004780728391No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC12230.2643232740641162No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC12110.2617297505246482No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11890.2569749573689568No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT11880.2567588304073345No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11090.23968480043916998No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT10690.23103972197427658No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC9930.21461407289097909No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT9920.21439794592935674No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8490.18349179041736277No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC8440.1824111556092511No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT8280.17895312422329374No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8170.17657572764544804No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC7540.1629597290632409No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT7360.1590694437540389No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7340.1586371898307942No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG7040.15215338098212414No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7010.15150500009725715No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACCGT6940.14999211136590077No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC6480.14005027113127336No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCGAA6460.1396180172080287No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6390.13810512847667233No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6340.13702449366856065No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG6250.13507935101395965No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCAGC5770.12470525685608755No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5750.12427300293284287No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5550.11995046370039616No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5510.11908595585390681No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5400.11670855927606112No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5070.10957636954252406No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5050.10914411561927938No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC4930.10655059207981135No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)